The JP1.3 pinout by color is:
[1] (Empty)
[2] Yellow
[3] Black
[4] Green
[5] (Empty)
[6] White
Where you can usually find pin numbers by peeking inside the remote.
...but I can't really complain.  This interface was so easy to prepare, it felt like cheating.  My soldering iron hates me.  The six one-pin sockets were easy to superglue together.  
-I snipped the blue wire from the socket.  
-I removed the red wire's contact from its socket and snipped the red wire shorter than the blue.  
-Twisted the snipped blue and red together.  
-I glued green to black with no metal showing (plastic tab sides glued together), 
-glued white socket to the socket with a contact still in it but left no metal showing.  
-Then, glued yellow socket to the empty socket WITH PLASTIC TAB OF EMPTY SOCKET FACING OUT OPPOSITE YELLOW SOCKET.  
-Then, I glued the 2x1s together to match the pinout above.  An open VUR8 remote's header was my reference.
This leaves a single exposed plastic tab showing in the 3x2 group to mark pin 1 (no nail polish required).  I'll probably put some heat shrink on for strain relief, but it works great as-is.  
I also discovered that on my old XP workstation, COM ports 1 and 3-10 were in use...some virtual ports created by mobile devices may have caused this.  So, I had to change the COM port from 11 to 2 before Tommy's testing program would detect the interface.  
Drivers were just updated last month. Download v 2.08.28 here:
http://www.ftdichip.com/Drivers/CDM/CDM20828_Setup.exe
oh yeah, those green and red led's are sweet!